Linkage Group VI

This table contains molecular mapping data from the Silflow-Lefebvre laboratory at the University of Minnesota.
Asterisks denote BAC clones at the end of a contig.

LG MAPPED MARKER ACCESSION # v2.0 SCAFFOLD v3.0 SCAFFOLD CONTIG SIZE OVERLAP WITH SCREENED BY BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC BAC
VI MT AF399653 193,691 3 (see note below) Ferris/Goodenough 10n20 11c13 11h12 (12h6) 13c19 15l14 16c23 16h22 17b14 18b16 18k18 18n16 18p21 1i1 20f17 20l2 20p1 21a4 (21c5) 21e12 22i5 (22m24) 23c16 24a11 (24d16) 24f7 24k9 25f23 25i16 25j4 26j18 27h1 28d17 29d18 2f4 2m17 2n21 30p21 30p22 31e10 31h18 32f19 32k2 33d13 33i24 33j2 33o13 33o16 35j12 (37g17) 37m14 (38c9) 39c21 39l13 4h3 4j21 4n18 5c15 5e21 6n12 7d15 9b20 9l19
VI HSP70B X96502 75 3 124 kb HSP70B contig (124 kb) Silflow/Lefebvre 24e16 33b20 36o11* 38c23
VI RPL7a BI528445 75 3 HSP70B contig (124 kb) Silflow/Lefebvre 11i3 14d15* 33b20 36o11
VI EST 925005B02 BE441377 75 3 HSP70B contig (124 kb) Silflow/Lefebvre 11i3 14d15 33b20 36o11
VI TPX AF312025 20 3 143 kb TPX contig (143 kb) L.Keller 12d19* 20c3 21j17 23c21 27m18 27n19 38e3 40l3 8o1*
VI EST925004G12 BE441360 20 3 TPX contig (143 kb) Silflow/Lefebvre 12d19* 20c3 21j17 23c21 38e3 40l3 8o1
VI FA1 AF246990 20 3 TPX contig (143 kb) Silflow/Lefebvre 12d19* 1l13 23c21 27m18 28p11 2d4 38e3 40l3
VI EST 925020B06 BE442424 20 3 TPX contig (143 kb) Silflow/Lefebvre 12d19* 1l13 23c21 27m18 27n19 28p11 2d4 39h15 40l3 6f19
VI ATPC J04219 20 3 215 kb ATPC contig (215 kb) Silflow/Lefebvre 12e4 12i19 18e24 23m10* 25j8 29e3* 34h20 34n10 36f2 6i13
VI BAC 38o23-1.8 kb HindIII/BamHI fragment 20 Silflow/Lefebvre 14e22 16o5 19e4 20f11 21e3 26o12 29e3 29l14 2m4 38o23 7m4
VI BAC 6c4-3.7 kb HindIII/BamHI fragment 20 Silflow/Lefebvre 26o12 2m4 38o23 6c4 7m4
VI BAC 6c4-2.5 kb HindIII fragment 20 Silflow/Lefebvre 22f7 26o12 2n23 6c4 7m4
VI DHC3 U61366 27 3 76 kb Silflow/Lefebvre 16l22 22f10 2b6* 35e21*
VI EST AV392980 AV392980 27 3 98 kb Silflow/Lefebvre 24 e21 34o2 6h1 9l6
VI CNA80 BI816487 27 3 125 kb Silflow/Lefebvre 14i9* 17i9 22d14*
VI CNA46 27 58 kb CNA46 contig (58 kb) Silflow/Lefebvre 22f16 22i21 27o17 34m8 36n21* 4g11 5b20 9b8
VI RPS18 AW661088 27 3 CNA46 contig (58 kb) Silflow/Lefebvre 22f16 22i21 27o17 34m8 36n21* 4g11 5b20 9b8
VI S813 X53574 43 38 88 kb Silflow/Lefebvre 15o19* 20j24 21c18 21e11 21j24* 22d3 22k20 24j13 26p15 27m2 31e9 32i14 39a19 39f16 39j23 39p3 4i7
VI VFL3 AY328090 60 26 Silflow/Lefebvre 28c9 29f12 2j11 3e22 7e13
VI CNC30 M24072 29 26 94 kb CNC30 contig (94 kb) Silflow/Lefebvre 2d19 2k15* 33c16 39a9 39e7*
VI EST 925003F02 BE441254 29 26 CNC30 contig (94 kb) Silflow/Lefebvre 29j17 2d19 32k12 33c16 36h5 39a9 39e7 4h16
VI PF14 X14549 29 26 89 kb Silflow/Lefebvre 2f18 5d14 >6l2
VI PBT201 148 kb PBT201 contig (148 kb) Silflow/Lefebvre 36c1 4e18* 6m15 8h11*
VI ICL U18765 146 26 PBT201 contig (148 kb) Silflow/Lefebvre 36c1 4e18 6m15 8h11
VI CABI-1 X65119 146 26 Silflow/Lefebvre none
VI PPI AF156101 226 69 63 kb Silflow/Lefebvre 12l2 26d1* 33d17
VI CRY1 (CPH1) L07561 19 69 Silflow/Lefebvre none
VI TUG U31545 19 12 94 kb CNA9 contig Silflow/Lefebvre 19l10 20m10 22k18 25m10 27f3 27f21 30o12 34p2 34p3 37j22 38h9 38l8*
VI CNA9 BG843541 19 12 90 kb TUG contig Silflow/Lefebvre 10g2 10j16 12e10 12h4 22c11 25k1 26a17 32p2 36g17 38h9 38l8* 3j19*
VI GAS3 97 kb GAS3 contig (97 kb) Silflow/Lefebvre 12d3 24b5 24c2 24f10* 24g21 26i3* 2a2
VI RPS4 BG850189 9 12 GAS3 contig (97 kb) Silflow/Lefebvre 12d3 24b5 24c2 24f10 24g21 26i3 2a2
VI RPL41 AF130727 9 12 153 kb Silflow/Lefebvre 13g13 22k7 23j23 24c10* 28i23 30l14 32g15 37k2* 3a13
 

NOTE- BAC 25i16 is the most centromere-proximal BAC in the mating type locus.

BACs in parentheses represent the telomere-proximal end of the mating type locus.

 


Last updated on June 12, 2006
By Nancy Haas nancy-h@biosci.cbs.umn.edu

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